Feeding response genes
| A Functional classes . | . | . | . | . | ||||
|---|---|---|---|---|---|---|---|---|
| Gene class* . | Total on array . | Fold enrichment in feeding response† . | Number in feeding response . | Ref.‡ . | ||||
| Total number of gene | 17761 | 446 | ||||||
| Nuclear: nucleolus | 23 | 13.7 | 8 | |||||
| tRNA synthetase genes | 30 | 9.2 | 7 | |||||
| Translation factors | 43 | 9.2 | 10 | |||||
| RNA processing/modification | 71 | 6.7 | 12 | |||||
| Endoplasmic reticulum | 63 | 4.4 | 7 | |||||
| Mitochondrial | 179 | 4.2 | 19 | |||||
| Protein expression | 390 | 3.9 | 39 | Kim et al. (2001) | ||||
| RNA binding | 151 | 3.4 | 13 | |||||
| Germ line-enriched | 508 | 2.5 | 32 | Reinke et al. (2000) | ||||
| Biosynthesis | 478 | 2.4 | 29 | Kim et al. (2001) | ||||
| Muscle expressed genes | 1329 | 2.1 | 70 | Roy (2002) | ||||
| Worm-yeast orthologs | 1921 | 1.9 | 94 | Kim et al. (2001) | ||||
| B Gene expression mountains | ||||||||
| Gene class* | Total on array | Fold enrichment in feeding response† | Number in feeding response | Comments§ | ||||
| Genome | 17761 | 446 | ||||||
| Mount 41 | 7 | 11.3 | 2 | Protein expression | ||||
| Mount 40 | 8 | 14.8 | 3 | Protein expression | ||||
| Mount 20 | 160 | 11.4 | 46 | Germline, biosynthesis, protein expression, heat shock | ||||
| Mount 18 | 190 | 4.6 | 22 | Germline, oocyte, biosynthesis, protein synthesis | ||||
| Mount 05 | 978 | 2.3 | 56 | |||||
| Mount 02 | 1465 | 2.2 | 80 | Germline, oocyte, operons | ||||
| A Functional classes . | . | . | . | . | ||||
|---|---|---|---|---|---|---|---|---|
| Gene class* . | Total on array . | Fold enrichment in feeding response† . | Number in feeding response . | Ref.‡ . | ||||
| Total number of gene | 17761 | 446 | ||||||
| Nuclear: nucleolus | 23 | 13.7 | 8 | |||||
| tRNA synthetase genes | 30 | 9.2 | 7 | |||||
| Translation factors | 43 | 9.2 | 10 | |||||
| RNA processing/modification | 71 | 6.7 | 12 | |||||
| Endoplasmic reticulum | 63 | 4.4 | 7 | |||||
| Mitochondrial | 179 | 4.2 | 19 | |||||
| Protein expression | 390 | 3.9 | 39 | Kim et al. (2001) | ||||
| RNA binding | 151 | 3.4 | 13 | |||||
| Germ line-enriched | 508 | 2.5 | 32 | Reinke et al. (2000) | ||||
| Biosynthesis | 478 | 2.4 | 29 | Kim et al. (2001) | ||||
| Muscle expressed genes | 1329 | 2.1 | 70 | Roy (2002) | ||||
| Worm-yeast orthologs | 1921 | 1.9 | 94 | Kim et al. (2001) | ||||
| B Gene expression mountains | ||||||||
| Gene class* | Total on array | Fold enrichment in feeding response† | Number in feeding response | Comments§ | ||||
| Genome | 17761 | 446 | ||||||
| Mount 41 | 7 | 11.3 | 2 | Protein expression | ||||
| Mount 40 | 8 | 14.8 | 3 | Protein expression | ||||
| Mount 20 | 160 | 11.4 | 46 | Germline, biosynthesis, protein expression, heat shock | ||||
| Mount 18 | 190 | 4.6 | 22 | Germline, oocyte, biosynthesis, protein synthesis | ||||
| Mount 05 | 978 | 2.3 | 56 | |||||
| Mount 02 | 1465 | 2.2 | 80 | Germline, oocyte, operons | ||||
Over-represented functional classes in the feeding response gene groups. For clarity, gene groups with P>0.001 are not listed. Gene lists are shown in supplemental Table S7.
All representation factors are significant at P<0.001. The probability was determined using the normal approximation of the hypergeometric probability distribution.
Functional classes are from Proteome except where noted.
Functional groups over-represented in the mountains(Kim et al., 2001).