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Keywords: transcriptomics
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Journal Articles
Journal Articles
J Exp Biol (2023) 226 (14): jeb244315.
Published: 26 July 2023
... responses of C. virginica acclimated to low salinity using a common garden experiment with four populations exposed to two salinities. We used three transcriptomic analyses (edgeR, PERMANOVA and WGCNA) combined with physiology data to identify the effect of genotype (population), environment (salinity...
Includes: Supplementary data
Journal Articles
J Exp Biol (2023) 226 (1): jeb245191.
Published: 13 January 2023
... natural microbiomes. However, the mechanisms behind these effects are unclear. Here, we compared gene expression profiles of the tadpole gut transcriptome, and tadpole gut microbial metagenome, between colonized and depleted tadpoles under cool or warm conditions. Our goal was to identify differences...
Includes: Supplementary data
Journal Articles
J Exp Biol (2022) 225 (17): jeb244513.
Published: 7 September 2022
... to juvenile and adult life on the reef. Some species also change their lifestyle over this period and become nocturnal. While these ecological transitions are well documented, little is known about the ontogeny of nocturnal reef fish vision. Here, we used transcriptomics to investigate visual development...
Includes: Supplementary data
Journal Articles
J Exp Biol (2022) 225 (12): jeb244162.
Published: 27 June 2022
...Matt J. Thorstensen; Andy J. Turko; Daniel D. Heath; Ken M. Jeffries; Trevor E. Pitcher ABSTRACT Transcriptomic research provides a mechanistic understanding of an organism's response to environmental challenges such as increasing temperatures, which can provide key insights into the threats posed...
Includes: Supplementary data
Journal Articles
Journal Articles
J Exp Biol (2022) 225 (7): jeb243630.
Published: 12 April 2022
... Summary: A multi-scale comparative study of muscles with different fiber type composition and architecture shows that intricate fine-tuning across gene, protein and fascicle scales shapes specialized muscle function. Myosin isoforms Soleus Tibialis anterior Transcriptomics Shortening velocity...
Includes: Supplementary data
Journal Articles
Journal Articles
J Exp Biol (2020) 223 (24): jeb191262.
Published: 17 December 2020
...Alex S. Torson; Yun-wei Dong; Brent J. Sinclair ‘Omics’ methods, such as transcriptomics, proteomics, lipidomics or metabolomics, yield simultaneous measurements of many related molecules in a sample. These approaches have opened new opportunities to generate and test hypotheses about...
Journal Articles
J Exp Biol (2020) 223 (7): jeb213975.
Published: 3 April 2020
... transcriptomic responses to temperature; more differentially expressed genes were upregulated in the field compared with lab larvae. Developmental temperature fluctuations alone had minimal effects on long-term gene expression patterns, with the exception of a somewhat elevated stress response in the lab...
Includes: Supplementary data
Journal Articles
J Exp Biol (2019) 222 (6): jeb188300.
Published: 18 March 2019
..., and on transcriptome analysis, C. monoculus exhibits extreme intraspecific variation in the use of vitamin A 1 /A 2 chromophore in their photoreceptors. Fish living in turbid water had higher proportions of vitamin A 2 , shifting sensitivities to longer wavelengths, than fish living in clear water. Furthermore, we...
Includes: Supplementary data
Journal Articles
J Exp Biol (2019) 222 (1): jeb192195.
Published: 10 January 2019
... oscillations in the absence of external cues. The transcripts reported here with rigorous annotation and specific functions in circadian biology provide the groundwork for functional characterization of novel players in the zebrafish retinal clock. Fig. 2. Diurnal transcriptome of adult zebrafish whole...
Includes: Supplementary data
Journal Articles
J Exp Biol (2018) 221 (3): jeb164400.
Published: 13 February 2018
... Transcriptomics RNA-seq Biomineralization Shell formation (need 6-10) Thecosome pteropods, a group of marine planktonic shelled gastropods, contribute substantially to food webs and both carbon and carbonate flux in many pelagic ecosystems ( Berner and Honjo, 1981 ; Fabry and Deuser, 1991 ; Noji et...
Includes: Supplementary data
Journal Articles
J Exp Biol (2017) 220 (12): 2149–2153.
Published: 15 June 2017
... expressed transcripts. These data suggest face specialization in P. fuscatus is related to shifts in the brain transcriptome associated with genes distinct from those related to general visual learning and social interactions. * Author for correspondence ( berens.ali@gmail.com ) Competing...
Includes: Supplementary data
Journal Articles
J Exp Biol (2016) 219 (11): 1705–1716.
Published: 1 June 2016
... temperatures (14°C and 20°C) and used RNA sequencing to examine the transcriptome-wide responses to elevated water temperature in both species. Consistent with having a lower temperature tolerance, longfin smelt exhibited a pronounced cellular stress response, with an upregulation of heat shock proteins, after...
Includes: Supplementary data
Journal Articles
J Exp Biol (2015) 218 (24): 4005–4014.
Published: 1 December 2015
... on endocrine factors to regulate behavioral maturation, but whether neurosecretory systems are central to this process is not known. To explore this, we performed transcriptomic profiling of a neurosecretory region of the brain, the pars intercerebralis (PI) . We first compared PI transcriptional profiles...
Includes: Supplementary data
Journal Articles
J Exp Biol (2015) 218 (12): 1822–1833.
Published: 1 June 2015
...Brent L. Lockwood; Kwasi M. Connor; Andrew Y. Gracey; Jason E. Podrabsky; Jonathon H. Stillman; Lars Tomanek ABSTRACT Transcriptomics is a powerful tool for elucidating the molecular mechanisms that underlie the ability of organisms to survive and thrive in dynamic and changing environments. Here...
Includes: Supplementary data
Journal Articles
Journal Articles
J Exp Biol (2015) 218 (5): 767–777.
Published: 1 March 2015
...   109 , 8635 - 8640 . 10.1073/pnas.1120523109 Cheviron , Z. A. , Connaty , A. D. , McClelland , G. B. and Storz , J. F. ( 2014 ). Functional genomics of adaptation to hypoxic cold-stress in high-altitude deer mice: transcriptomic plasticity and thermogenic performance...
Includes: Supplementary data
Journal Articles
J Exp Biol (2011) 214 (22): 3808–3821.
Published: 15 November 2011
... transcriptomic and proteomic experiments, physiological experiments and RNA interference to explore the mechanistic basis for this lipid loss. Lipid loss was associated with thousands of gene expression changes in abdominal fat bodies. Many of these genes were also regulated in young bees by nutrition during...
Includes: Supplementary data