High fecundity, transparent embryos for monitoring the rapid development of organs and the availability of a well-annotated genome has made zebrafish a model organism of choice for developmental biology and neurobiology. This vertebrate model, a favourite in chronobiology studies, shows striking circadian rhythmicity in behaviour. Here, we identify novel genes in the zebrafish genome, which are expressed in the zebrafish retina. We further resolve the expression pattern over time and tentatively assign specific novel transcripts to retinal bipolar cells of the inner nuclear layer. Using chemical ablation and free run experiments we segregate the transcripts that are rhythmic when entrained by light from those that show sustained oscillations in the absence of external cues. The transcripts reported here with rigorous annotation and specific functions in circadian biology provide the groundwork for functional characterisation of novel players in the zebrafish retinal clock.
Identification of novel circadian transcripts in the zebrafish retina
Currently Viewing Accepted Manuscript - Newer Version Available
Soundhar Ramasamy, Surbhi Sharma, Bharat Ravi Iyengar, Shamsudheen Karuthedath Vellarikkal, Sridhar Sivasubbu, Souvik Maiti, Beena Pillai; Identification of novel circadian transcripts in the zebrafish retina. J Exp Biol 2018; jeb.192195. doi: https://doi.org/10.1242/jeb.192195
Download citation file:
Advertisement
2023 JEB Outstanding Paper Prize shortlist and winner
The JEB Editors are delighted to announce the shortlisted authors for the 2023 JEB Outstanding Paper Prize. Read the winning paper - Tiny spies: mosquito antennae are sensitive sensors for eavesdropping on frog calls - by Hoover Pantoja-Sanchez and Brian Leavell from Ximena Bernal's lab at Purdue University, USA.
JEB Science Communication Workshop for ECRs
If you’re an early-career researcher interested in science communication and are attending the SEB Annual Conference in Prague this summer, come a day early and join the JEB Editors at a sci comm workshop to learn the key writing skills needed to promote your research to a broad audience beyond your peers (1 July at 14.30-17.30). Places are limited to 24 attendees, and applicants should apply through the SEB registration page by 30 April 2024.
Bridging the gap between controlled conditions and natural habitats in understanding behaviour
Novel technologies enable behavioural experiments with non-model species, in naturalistic habitats and with underexplored behaviours. In their Commentary, Scholz and colleagues discuss how to obtain a deeper understanding of the natural ecology and lifestyle of study animals.
How a macrourid fish remains buoyant at depths it should be unable to reach
Fish with swimbladders should not be capable of descending below 7200m, but when Alan Jamieson and Todd Bond spotted a macrourid fish at 7259m, they knew they had seen something miraculous. Working with Imantes Priede, they reveal that the swimbladder of a 1 kg fish could hold 37.9 g of oxygen, sufficient to offset the weight of the fish's bones, and take 221-440 days to fill, which is plausible because it takes years for the fish to descend to such depths.
ECR Workshop on Positive Peer Review
Are you an ECR looking for tips on how to write concise, astute and useful manuscript reviews? If so, join the JEB Editors at a 2-hour JEB-sponsored Workshop on Positive Peer Review at the Canadian Society of Zoologists annual meeting in Moncton on 9 May 2024 at 13.00-15.00. There are 25 spaces for ECRs and selection is first come, first serve. To sign up, check the ECR Workshop box when you register for the CSZ meeting.