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Keywords: RNA-Seq
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Journal Articles
In collection:
Membrane Trafficking
Journal:
Journal of Cell Science
J Cell Sci (2023) 136 (2): jcs260477.
Published: 18 January 2023
... in biological triplicates and transcript abundance assessed by RNA-sequencing (RNA-seq). In total, abundance profiles were obtained for over 13,000 transcripts. In line with previous findings ( Na et al., 2007 ; Mathavarajah et al., 2018 ), differential expression analysis using a false discovery rate (FDR...
Includes: Supplementary data
Journal Articles
In collection:
Tools in Cell Biology
Journal:
Journal of Cell Science
J Cell Sci (2023) 136 (1): jcs260312.
Published: 9 January 2023
.... ( 2017 ). Rna-seq differential expression analysis: an extended review and a software tool . PLoS ONE 12 , e0190152 . 10.1371/journal.pone.0190152 Korthauer , K. , Kimes , P. K. , Duvallet , C. , Reyes , A. , Subramanian , A. , Teng , M. , Shukla , C. , Alm...
Journal Articles
In collection:
Mechanobiology
Huizhan Liu, Kimberlee P. Giffen, M'Hamed Grati, Seth W. Morrill, Yi Li, Xuezhong Liu, Karoline J. Briegel, David Z. He
Journal:
Journal of Cell Science
J Cell Sci (2021) 134 (7): jcs254458.
Published: 13 April 2021
... as early as postnatal day 12. RNA-seq analysis showed significant gene enrichment of biological processes related to transcriptional regulation, cell cycle, DNA damage/repair and autophagy in Lbh -null OHCs. In addition, Wnt and Notch pathway-related genes were found to be dysregulated in Lbh -deficient...
Includes: Supplementary data
Journal Articles
Sami Hassine, Florence Bonnet-Magnaval, Louis Philip Benoit Bouvrette, Bellastrid Doran, Mehdi Ghram, Mathieu Bouthillette, Eric Lecuyer, Luc DesGroseillers
Journal:
Journal of Cell Science
J Cell Sci (2020) 133 (14): jcs247155.
Published: 23 July 2020
.... Staufen1 RNA Localization Post-transcriptional regulation Mitotic spindle RNA-Seq Ribosomal RNA The localization of RNA molecules to specific subcellular compartments, a cellular mechanism that is crucial for normal progression of several biological processes, functions to spatiotemporally...
Includes: Supplementary data
Journal Articles
Elizabeth L. Zoeller, Brian Pedro, Jessica Konen, Bhakti Dwivedi, Manali Rupji, Niveda Sundararaman, Lei Wang, John R. Horton, Chaojie Zhong, Benjamin G. Barwick, Xiaodong Cheng, Elisabeth D. Martinez, Matthew P. Torres, Jeanne Kowalski, Adam I. Marcus, Paula M. Vertino
Journal:
Journal of Cell Science
J Cell Sci (2019) 132 (19): jcs231514.
Published: 9 October 2019
... invasion. Summary: Image-guided capture and sequencing of invasive cancer cells reveals novel leader- and follower-specific gene mutations, highlighting an important relationship between genomic and phenotypic heterogeneity during collective invasion. Metastasis Lung cancer RNA-seq Mutation...
Includes: Supplementary data