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Keywords: RNA-seq
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Journal Articles
Journal: Development
Development (2022) 149 (18): dev200715.
Published: 26 September 2022
.... Arabidopsis thaliana Proteomics Early embryogenesis RNA-seq Shenzhen Municipal Science and Technology Innovation Council 20200925153547003 State Key Laboratory of Agrobiotechnology Chinese University of Hong Kong http://dx.doi.org/10.13039/501100004853 8300052...
Includes: Supplementary data
Journal Articles
Journal: Development
Series: REVIEW COMMONS TRANSFER
Development (2022) 149 (11): dev200793.
Published: 10 June 2022
... encompasses many major morphological events, including segmentation, body regionalization, gut morphogenesis and limb development. In addition, we use short- and long-read RNA-seq to generate an improved Parhyale genome annotation, enabling deeper classification of identified regulatory elements. We discover...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (24): dev199675.
Published: 24 December 2021
... development. Selfing Isogenic Forward genetics Tail bud Noto Mesogenin Mutant RNA-seq University of Basrah http://dx.doi.org/10.13039/100012026 National Institute of Child Health and Human Development http://dx.doi.org/10.13039/100000071 R15HD060017 References...
Includes: Supplementary data
Journal Articles
Journal Articles
In collection:
Neural development
Journal: Development
Development (2021) 148 (15): dev191619.
Published: 4 August 2021
... regulation is target and co-factor dependent, contingent on the milieu of factors that are present at different stages of development. To determine the role of Taf15 in early Xenopus development, we used RNA-sequencing (RNA-seq) from single embryos depleted of M- and Z-Taf15, using reagents that targeted...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2020) 147 (8): dev184259.
Published: 12 April 2020
... analyze the transcriptome of discrete but continuously differentiating germline cysts. We first isolated single cysts at each recognizable stage from wild-type testes, which were subsequently applied for RNA-seq analyses. Our data delineate a high-resolution transcriptome atlas in the entire male GSC...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2018) 145 (24): dev170142.
Published: 18 December 2018
... in inner ear development and function. Otocyst Conditional mutant Ligand trap RNA-Seq The membranous labyrinth of the mammalian inner ear is one of the most complex examples of organ morphogenesis. An unremarkable patch of cranial ectoderm is transformed into a structurally intricate...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (13): dev164640.
Published: 11 July 2018
... RNA with 4-thiouracil in a specific cell type in vivo followed by detection through an RNA-seq-based method that specifically distinguishes the thiolated uridine by base conversion. This method has successfully identified the cell type-specific transcriptome in three different tissues: endothelial...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2018) 145 (3): dev158501.
Published: 7 February 2018
.... Depending on the samples compared, selection results were affected mostly by technical factors (library construction protocol, RNA-seq coverage, read distribution) where such properties differed between studies and datasets. To reduce these effects, when data from multiple studies were treated in a single...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (1): dev155978.
Published: 8 January 2018
... Yan , L. , Yang , M. , Guo , H. , Yang , L. , Wu , J. , Li , R. , Liu , P. , Lian , Y. , Zheng , X. , Yan , J. , et al. ( 2013 ). Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells . Nat. Struct. Mol. Biol.   20 , 1131...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2017) 144 (19): 3487–3498.
Published: 1 October 2017
... of heart development, during which many congenital heart disease malformations likely arise, we conducted an RNA-seq timecourse in zebrafish from 30 hpf to 72 hpf and identified 5861 genes with altered expression. We clustered the genes by temporal expression pattern, identified transcription factor...
Includes: Supplementary data
Journal Articles
In collection:
Neural development
Journal: Development
Development (2017) 144 (19): 3521–3532.
Published: 1 October 2017
... as they are clustered at the midline, resembling other midline structures important for maintaining the bilateral organization of the neural tube. Adhesion Cell movement Midline Pituitary Chick RNA-seq Sp8 Placodes are discrete thickenings of the cranial ectoderm localized in the proximity...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (17): 3177–3188.
Published: 1 September 2017
... strains, we performed an RNA-seq screen, identifying tip- and stalk-enriched gene sets in the developing collecting duct system. Detailed in situ hybridization studies of tip-enriched predictions identified UBT-enriched gene sets conserved between the mouse and human kidney. Comparative spatial analysis...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (7): 1283–1295.
Published: 1 April 2017
... in the genome is poorly understood. Here we identified the transcriptomes of Xenopus foregut and hindgut progenitors, which are conserved with mammals. Using RNA-seq and ChIP-seq we show that BMP/Smad1 regulates dorsal-ventral gene expression in both the endoderm and mesoderm, whereas Wnt/β-catenin acts...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (2): 292–304.
Published: 15 January 2017
.../ Summary: RNA-sequencing analysis identifies 90 novel mRNAs that are enriched at the vegetal pole of Xenopus laevis oocytes, and reveals novel roles for some of these mRNAs in primordial germ cell development. Xenopus RNA-seq PGCs Localized RNAs Gene pathways Scaffold For many...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (1): 17–32.
Published: 1 January 2017
... sequencing has been used to study developmental and stem cell biology, providing insights into cell type diversity and developmental dynamics. RNA-Seq Computational biology Gene regulatory networks Pseudotime Single cell Stem cells To characterize the diversity of cell types...
Journal Articles
Journal: Development
Development (2016) 143 (11): 1914–1925.
Published: 1 June 2016
... of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/3.0 ), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. Highlighted article: Dual ChIP-seq and RNA-seq in vivo experiments show...
Includes: Supplementary data