1-20 of 29
Keywords: RNA-seq
Close
Follow your search
Access your saved searches in your account

Would you like to receive an alert when new items match your search?
Close Modal
Sort by
Journal Articles
Journal: Development
Development dev.200715.
Published: 11 August 2022
..., indicating active translation and auxin signalling were important events in Arabidopsis embryo development. Combining RNA-Seq data, the correlation between mRNA and protein was evaluated. An overall positive correlation was found between mRNA and protein (mean p-value =0.75). This work provided...
Journal Articles
Journal: Development
Series: REVIEW COMMONS TRANSFER
Development (2022) 149 (11): dev200793.
Published: 10 June 2022
... encompasses many major morphological events, including segmentation, body regionalization, gut morphogenesis and limb development. In addition, we use short- and long-read RNA-seq to generate an improved Parhyale genome annotation, enabling deeper classification of identified regulatory elements. We discover...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (24): dev199675.
Published: 24 December 2021
...://dx.doi.org/10.13039/100012026 Selfing Isogenic Forward genetics Tail bud Noto Mesogenin Mutant RNA-seq Summary: The mangrove killifish, a self-fertilizing vertebrate model, allows rapid identification of the mutated genes noto and msgn1 from mutant strains and their genetic roles...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (23): dev200182.
Published: 3 December 2021
... opposing impact of BMP and SHH signaling on early digit patterning and outgrowth is revealed. SMAD4 BMP SHH Limb development Anterior Mouse ChIP-seq RNA-seq Cistrome Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung http://dx.doi.org/10.13039/501100001711...
Includes: Supplementary data
Journal Articles
In collection:
Neural development
Journal: Development
Development (2021) 148 (15): dev191619.
Published: 4 August 2021
... of fold change and dispersion for RNA-seq data with DESeq2 . Genome Biol. 15 , 550 . 10.1186/s13059-014-0550-8 Martini , A. , La Starza , R. , Janssen , H. , Corveleyn , A. , Somers , R. , Aventin , A. and Marynen , P. ( 2002 ). Advances in brief recurrent...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2020) 147 (8): dev184259.
Published: 12 April 2020
... analyze the transcriptome of discrete but continuously differentiating germline cysts. We first isolated single cysts at each recognizable stage from wild-type testes, which were subsequently applied for RNA-seq analyses. Our data delineate a high-resolution transcriptome atlas in the entire male GSC...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2019) 146 (13): dev170910.
Published: 8 July 2019
... in different regions of the central nervous system. Whether astrocyte diversity is attributable to developmental processes and bears functional consequences, especially in humans, is unknown. RNA-seq of human pluripotent stem cell-derived regional astrocytes revealed distinct transcript profiles, suggesting...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (24): dev170142.
Published: 18 December 2018
... in inner ear development and function. Otocyst Conditional mutant Ligand trap RNA-Seq To identify transcriptional targets of FGFR2b ligands during early otocyst morphogenesis, when they are required for both vestibular and cochlear outgrowth, we chose three overlapping DOX exposures...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (13): dev164640.
Published: 11 July 2018
... RNA with 4-thiouracil in a specific cell type in vivo followed by detection through an RNA-seq-based method that specifically distinguishes the thiolated uridine by base conversion. This method has successfully identified the cell type-specific transcriptome in three different tissues: endothelial...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (6): dev157453.
Published: 14 March 2018
... Amniotes Early embryo RNA-seq Signaling pathways Avian species have been used as valuable research models for virology, cancer, immunology, developmental biology and biotechnology ( Streit et al., 2000 ; Skromne and Stern, 2001 ; Stern, 2005 ; Han, 2009 ; Torlopp et al., 2014 ). Owing...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (3): dev158501.
Published: 7 February 2018
... of coefficient of variation. Thresholds were applied along the x -axis (average log 2 FPKM) and y -axis (log CV 2 ) to identify the most variable genes. Depending on the samples compared, selection results were affected mostly by technical factors (library construction protocol, RNA-seq coverage, read...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (1): dev155978.
Published: 8 January 2018
... Yan , L. , Yang , M. , Guo , H. , Yang , L. , Wu , J. , Li , R. , Liu , P. , Lian , Y. , Zheng , X. , Yan , J. , et al. ( 2013 ). Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells . Nat. Struct. Mol. Biol.   20 , 1131...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (19): 3625–3632.
Published: 1 October 2017
...Mike Adam; Andrew S. Potter; S. Steven Potter Single-cell RNA-seq is a powerful technique. Nevertheless, there are important limitations, including the technical challenges of breaking down an organ or tissue into a single-cell suspension. Invariably, this has required enzymatic incubation at 37°C...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (19): 3487–3498.
Published: 1 October 2017
... of heart development, during which many congenital heart disease malformations likely arise, we conducted an RNA-seq timecourse in zebrafish from 30 hpf to 72 hpf and identified 5861 genes with altered expression. We clustered the genes by temporal expression pattern, identified transcription factor...
Includes: Supplementary data
Journal Articles
In collection:
Neural development
Journal: Development
Development (2017) 144 (19): 3521–3532.
Published: 1 October 2017
..., adenohypophyseal placode precursors differ from the remaining preplacodal ectoderm as they are clustered at the midline, resembling other midline structures important for maintaining the bilateral organization of the neural tube. Adhesion Cell movement Midline Pituitary Chick RNA-seq Sp8...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (17): 3177–3188.
Published: 1 September 2017
... strains, we performed an RNA-seq screen, identifying tip- and stalk-enriched gene sets in the developing collecting duct system. Detailed in situ hybridization studies of tip-enriched predictions identified UBT-enriched gene sets conserved between the mouse and human kidney. Comparative spatial analysis...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (7): 1283–1295.
Published: 1 April 2017
... in the genome is poorly understood. Here we identified the transcriptomes of Xenopus foregut and hindgut progenitors, which are conserved with mammals. Using RNA-seq and ChIP-seq we show that BMP/Smad1 regulates dorsal-ventral gene expression in both the endoderm and mesoderm, whereas Wnt/β-catenin acts...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (2): 292–304.
Published: 15 January 2017
.../ Summary: RNA-sequencing analysis identifies 90 novel mRNAs that are enriched at the vegetal pole of Xenopus laevis oocytes, and reveals novel roles for some of these mRNAs in primordial germ cell development. Xenopus RNA-seq PGCs Localized RNAs Gene pathways Scaffold For many...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (1): 17–32.
Published: 1 January 2017
...). Deposited in PMC for release after 12 months. References Achim , K. , Pettit , J.-B. , Saraiva , L. R. , Gavriouchkina , D. , Larsson , T. , Arendt , D. and Marioni , J. C. ( 2015 ). High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin...
Journal Articles
Journal: Development
Development (2016) 143 (11): 1914–1925.
Published: 1 June 2016
... of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/3.0 ), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. Highlighted article: Dual ChIP-seq and RNA-seq in vivo experiments show...
Includes: Supplementary data