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Keywords: Machine learning
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Journal Articles
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Plant development
Journal: Development
Development (2022) 149 (18): dev200889.
Published: 15 September 2022
... approach to quantify stigma and ovary morphology. We demonstrate the suitability of the approach, which uses light-microscopy imaging and machine learning, for the analysis of floral organ traits in field-grown plants using fresh and fixed samples. We show that the unpollinated carpel undergoes a well...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (18): dev199611.
Published: 8 September 2021
.... Hence, there is a pressing demand for a coding-free, intuitive and scalable solution that analyses such image data in an automated yet rapid manner. Here, we present MOrgAna, a Python-based software that implements machine learning to segment images, quantify and visualize morphological and fluorescence...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (1): dev188474.
Published: 10 January 2021
...Paul Villoutreix ABSTRACT Developmental biology has grown into a data intensive science with the development of high-throughput imaging and multi-omics approaches. Machine learning is a versatile set of techniques that can help make sense of these large datasets with minimal human intervention...
Journal Articles
Journal: Development
Development (2020) 147 (23): dev193631.
Published: 8 December 2020
... sequencing techniques combined with machine learning as a principled method to select a sequence of programming factors that are important not only in adult neurons but also during differentiation. Understanding how transcription factors and signaling molecules are utilized in diverse cell types...
Journal Articles
Journal: Development
Development (2017) 144 (7): 1350–1361.
Published: 1 April 2017
... analysis and machine learning methods identify cell divisions oriented by mechanical cues to reduce strain. Image analysis Machine learning Time-lapse microscopy Morphogenesis Oriented cell division Laser ablation Axis elongation is a conserved morphogenetic process in which embryos...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2014) 141 (4): 878–888.
Published: 15 February 2014
... non-muscle pericardial cells (PCs), development of which is regulated by a network of conserved signaling molecules and transcription factors (TFs). Here, we used machine learning with array-based chromatin immunoprecipitation (ChIP) data and TF sequence motifs to computationally classify cell type...
Includes: Supplementary data