The zebrafish mutation curly up (cup) affects the zebrafish ortholog of polycystic kidney disease 2, a gene that encodes the Ca2+-activated non-specific cation channel, Polycystin 2. We have characterized two alleles of cup, both of which display defects in organ positioning that resemble human heterotaxia, as well as abnormalities in asymmetric gene expression in the lateral plate mesoderm (LPM) and dorsal diencephalon of the brain. Interestingly, mouse and zebrafish pkd2-/- mutants have disparate effects on nodalexpression. In the majority of cup embryos, the zebrafish nodal gene southpaw (spaw) is activated bilaterally in LPM, as opposed to the complete absence of Nodal reported in the LPM of the Pkd2-null mouse. The mouse data indicate that Pkd2 is responsible for an asymmetric calcium transient that is upstream of Nodal activation. In zebrafish, it appears that pkd2 is not responsible for the activation of spawtranscription, but is required for a mechanism to restrict spawexpression to the left half of the embryo. pkd2 also appears to play a role in the propagation of Nodal signals in the LPM. Based on morpholino studies, we propose an additional role for maternal pkd2 in general mesendoderm patterning.

The vertebrate body plan is organized into three primary body axes:anterior-posterior (AP), dorsal-ventral (DV), and left-right (LR). Although patterning along the AP and DV axes is readily observable, the internal asymmetries of the left-right axis are masked by an external bilateral symmetry. Instead, it is the asymmetric placement of internal organs that distinguishes the left and right sides. Human laterality disorders arise from defects in left-right patterning and exist in two primary forms: situs inversus and heterotaxia. Situs inversus, characterized by a complete reversal of the viscera, occurs at a rate of about 1 in 20,000 people and is associated with an increased incidence of congenital heart disease (CHD)(Mercola and Levin, 2001; Ramsdell, 2005). Heterotaxia,where one or more organs are positioned incorrectly, can have catastrophic effects on the development of the organism. Approximately 1 in every 8,000 births will result in heterotaxia, which also often manifests as CHD(Mercola and Levin, 2001).

The information necessary for the proper positioning of the viscera is provided by earlier asymmetric events including the left-side-specific expression of Nodal-related signaling factors. In the mouse embryo, asymmetric activation of Nodal transcription occurs at the ventral node during gastrulation. The node is lined by an epithelium that has one primary cilium protruding from the surface of each cell. Although cilia located at the node have 9+0 axonemes and are generally thought to be immotile, the presence of Left-right dynein (Ird; Dnahc11 - Mouse Genome Informatics) is thought to enable the central population of cilia to rotate in a clockwise direction. This ciliary rotation drives a leftward fluid flow over the node that is necessary for the proper establishment of sidedness, as mutations that compromise ciliogenesis or inhibit the mobility of these cilia result in randomization of the viscera(McGrath and Brueckner, 2003). In teleosts, Kupffer's vesicle is thought to be analogous to the mouse node in the establishment of left-right patterning(Amack and Yost, 2004). A conserved role for ciliary flow in the establishment of left-right asymmetry is supported by motile cilia and flow found at Kupffer's vesicle in zebrafish and Medaka embryos (Essner et al., 2005; Kramer-Zucker et al., 2005; Okada et al.,2005). Ciliary flow in the mouse has also been shown to be upstream of an asymmetric calcium flux in the epithelial cells adjacent to the left side of the node (McGrath and Brueckner, 2003), an event that appears to be conserved in chick and zebrafish (Raya et al.,2004; Sarmah et al.,2005). This left-specific intracellular calcium release is thought to be elicited by the flow-induced stretch activation of the calcium channel,polycystic kidney disease 2 (Pkd2), which localizes to the cilia of the mouse node (McGrath et al.,2003).

Human PKD2 encodes a six-pass transmembrane,Ca2+-activated, non-specific cation channel, termed polycystin 2(PC2) (Gonzalez-Perrett et al.,2001; Hanaoka et al.,2000; Vassilev et al.,2001). Heterozygous PKD2 mutations are found in approximately 15% of human autosomal dominant polycystic kidney disease patients (Wu et al., 1997). Mouse embryos homozygous for an inactivated allele of Pkd2 exhibit severe cardiac and kidney malformations and are embryonic lethal between E13.5 and parturition (Wu et al.,2000). Pkd2-/- mice also display laterality disturbances in Nodal-related signaling genes, embryonic turning,visceral organs and heart morphogenesis. Most critically, without PC2 activity, no left-specific calcium expression is detected at the node and asymmetric activation of Nodal transcription does not occur,resulting in right isomerism (McGrath et al., 2003; Pennekamp et al.,2002). Therefore, current models for the initiation of a left-right symmetry breaking event include a role for PC2 upstream of asymmetric Nodal gene transcription. The link connecting this calcium transient with Nodal activation in the mouse is still unclear,although evidence exists for the involvement of the Notch pathway(Raya et al., 2004). In this paper, we present evidence for an alternative role of pkd2 in the development of the left-right axis.

Here we describe our analysis of curly up (cup), which encodes the zebrafish ortholog of polycystic kidney disease 2. We characterized two alleles of cup, and even though one allele of cup appears to be a null, cup mutants do not display defects in kidney patterning nor do they develop kidney cysts. cup alleles display left-right defects in organ positioning that resemble human heterotaxia, as well as abnormalities in asymmetric gene expression in the lateral plate mesoderm (LPM) and dorsal diencephalon of the brain. Surprisingly, nodal expression patterns in the LPM are different in the mouse and zebrafish pkd2-/- mutants. In the majority of cup embryos, spaw is activated bilaterally in LPM. Although defects in the development of the notochord can result in bilateral transcription of nodal, we find that the midline structures in cup embryos are not compromised. Thus, in zebrafish, PC2 is not responsible for the activation of spaw transcription but is required for a mechanism to bias spaw expression towards the left half of the embryo.

### Zebrafish strains

cuptc321 and cupty30b were obtained from a large-scale ENU mutagenesis screen(Brand et al., 1996; Haffter et al., 1996). Both cup mutations were generated in the TU strain and maintained by outcrossing to AB, WIK and PWT. PWT is a wild-type strain generated in our laboratory that has a very low background of left-right defects. The cup phenotypes and differences in severity between cuptc321 and cupty30b have been observed in multiple generations.

### Positional cloning of curly up

Mapping of the cup locus was performed with SSLP markers as described (Liao and Zon,1999). The cup genomic interval was narrowed between markers z10888 and z25625 on chromosome 1. Sequence surrounding these SSLP markers was identified through the Ensembl Sanger Sequence Database. Additional genomic sequence from the region was identified using BAC ends and BAC mate pair analysis to identify overlapping clones and assemble a genetic contig surrounding the cup locus. New SSLP markers used to narrow the cup genetic interval were created based on the identified genomic sequence: z9697.9 and z11984.6 (z9697.9F,5′-GGTCCGCTTTTGGTGCAGAC-3′; z9697.9R,5′-CTCTCAGCTCCACAAGTCGC-3′; z11984.6F,5′-CGCTCTCCAGAGAAAACCAC-3′; z11984.6R,5′-GTCTGATCGCAGCGGCGG-3′). The following SNP primers were used to confirm linkage with pkd2: pkd2LSNPf,5′-GATGTGCTTGGACGGATCCTG-3′; pkd2LSNPr,5′-CACACCTAAAGACACTGTCC-3′.

### Sequencing of cuptc321 and cupty30b and cloning and RT-PCR of pkd2

The zebrafish pkd2 gene was amplified from a 24-hour cDNA library created with the Marathon cDNA Amplification Kit (BD Biosciences) using cup5Bgl2f (5′-CAGATCAGATCTATGAGCTCCAGTCGCGTTCG-3′) and cup3PmeIr(5′-TCTGACGTTTAAACTCACAAGTGGGCGGGGC-3′). The PCR product was cut with BglII and PmeI, and inserted into the BglII and EcoRV sites of vector T7TS(Cleaver et al., 1996). For production of an in situ hybridization probe, a BglII-ApaI fragment from the T7TS-pkd2 plasmid was cloned into pBluescript II SK (+)using the BamHI and ApaI sites. Full-length sequence was obtained by 5′ and 3′ RACE. Mutations in cuptc321 and cupty30b were identified by sequencing genomic DNA.

RT-PCR of the pkd2 transcript was performed with total RNA isolated from 1-cell, 256-cell, 1K-cell, sphere, and 18-somite stage embryos. cDNA libraries were made with the SuperScript First-Strand Synthesis System for RT-PCR (Invitrogen) and primers located in exon 3 and exon 7 (pkd2 1F,5′-GTGGAGAGCCAACCAACTTC-3′; pkd2 2R,5′-CTGAAGCCGAGCCAGCGGCT-3′) were used to amplify a 700 bp fragment of pkd2.

### RNA probes and whole-mount in situ hybridization

DIG-labelled RNA probes were transcribed from linearized DNA templates and used in RNA in situ hybridization by standard methods. Antisense probes included cardiac myosin light chain (cmlc2; myl7 -ZFIN) (Yelon et al., 1999), forkhead 2 (fkd2; foxa3 - ZFIN)(Odenthal and Nusslein-Volhard,1998), preproinsulin (ins)(Milewski et al., 1998), southpaw (spaw) (Ahmad et al., 2004), paired-like homeodomain transcription factor(pitx2) (Yan et al.,1999), polycstic kidney disease 2 (pkd2), sonic hedgehog (shh)(Krauss et al., 1993; Thisse and Thisse, 1999), lefty1 (Bisgrove et al.,1999), lefty2(Bisgrove et al., 1999), SRY-box containing gene 17 (sox17)(Alexander and Stainier, 1999), alpha-tropomyosin (Ohara et al.,1989), orthodenticle homolog 5 (otx5)(Gamse et al., 2002), leftover (lov; kctd12.1 - ZFIN)(Gamse et al., 2003), and charon (char) (Hashimoto et al., 2004).

### Immunofluorescence

Embryos were fixed in Dent's fixative at 4°C overnight, gradually rehydrated into PBDT (1×PBS, 0.1% Tween 20, 1% DMSO), and blocked for 2 hours in PBDT containing 10% normal goat serum (NGS). To visualize cilia,embryos were incubated overnight at 4°C in a 1:400 dilution of monoclonal acetylated tubulin primary antibody (Sigma #T6793) in PBDT. Six 30-minute washes in PBDT containing 1% NGS and 0.1 M NaCl were administered before the last 30-minute wash in PBDT containing 1% NGS. The embryos were incubated overnight at 4°C with FITC-IgG2b at 1:500 (Southern Biotech #1090-02). The following day, the embryos were soaked in Hoechst (Molecular Probes #H3570)for 15 minutes at 1:1250 in PBDT before six additional 30-minute washes with PBDT containing 1% NGS and 0.1 M NaCl. After washing, the embryos were rinsed and stored in Slow Fade buffers (Molecular Probes #S-7461).

### Microscopy

Images of live embryos were taken using the ProgressC14 digital camera(Jenoptik) mounted on a Leica MZFL III microscope. Embryos processed for immunofluorescence were mounted in Aqua-PolyMount (Polysciences #18606) and visualized on a Zeiss LSM 510. Embryos processed for in situ hybridization analysis were mounted in modified GMM(Struhl, 1981) [100 ml Canada Balsam (Sigma #C-1795), 10 ml methylsalicylate (Sigma #M0387-100G)],visualized using a Leica DMRA microscope at 10× magnification, and photographed with the ProgressC14 digital camera.

### Morpholino injection

Morpholino antisense oligonucleotides (MO) (Gene Tools, LLC) were maintained in 50 μg/μl stock solutions in water at -80°C. The cup augMO, 5′-AGCTCATCGTGTATTTCTACAGTAA-3′, spans a portion of the 5′UTR directly upstream of the AUG start site and the start site itself. The pkd2 augMO [previously reported as hi4166 MO by Sun et al. (Sun et al., 2004)], 5′-AGGACGAACGCGACTGGAGCTCATC-3′, begins at the start AUG and extends into the first exon. Although these two MOs overlap by 8 nucleotides, only the pkd2 augMO effectively phenocopied cup (1-4 ng). The 9697-S1 splice-site MO,5′-GAAACGGGCCTTCTGTGAACTACAG-3′, is complimentary to the intron 3-exon 4 splice junction. The 9697-S2 splice-site MO,5′-TTAACATACGCAGTGCCATTCTTGG-3′, overlaps the exon 4-intron 4 splice junction of the pkd2 transcript. Only 9697-S1, used at 9 ng per embryo, was successful in phenocopying cup. Although this MO is predicted to block splicing, no alterations in the pkd2 message were observed by RT-PCR. Thus, we believe the 9697-S1 MO is more likely to be blocking translation. In support of this, other splice-site MOs have been shown to block translation of the message (M. Mullins, personal communication), but formal proof will require the generation of antibodies that recognize the Cup protein.

MOs were mixed with 5 mg/ml Phenol Red and injected into 1- to 4-cell stage embryos as described (Gritsman et al.,1999).

### Histological analyses

Embryos were fixed in 4% paraformaldehyde (Sigma P6148) in PBS overnight at 4°C, and stored in 4% sucrose in PBS. After a gradual dehydration into ethanol, embedding was performed according to the Electron Microscopy Sciences protocol for JB-4 histology (EMS #14270-00). The embryos were sectioned on a Leica RM2255 Rotary Microtome at 4 μm. Hematoxylin and Eosin staining (all components were in non-alcohol-based solutions) was performed according to laboratory protocols (J.S.-B., unpublished; available upon request).

### Mutations in the gene curly up affect pkd2

To gain insight into the genetic events involved in establishing the left-right axis, we have analyzed curly up, a mutation with left-right patterning defects that was originally isolated from a large-scale zebrafish mutagenesis screen as having a tail curl phenotype(Haffter et al., 1996). We utilized positional cloning techniques to identify the gene affected in the cup mutant. The cup mutation was placed on chromosome 1 using bulk segregant analysis (Talbot and Schier, 1999). Subsequent analysis was performed on 213 meiotic events to narrow the chromosomal location of cup to a 6.6 cM interval between simple sequence-length polymorphism (SSLP) markers z10888 and z25625(Liao and Zon, 1999). We assembled a set of genomic clones that span the cup locus using available genomic sequence from the Sanger sequencing project. New SSLP markers were then created from these contig sequences (z9697.9 and z11984.6)and used to further refine the location of the cup mutation to a 2.6 cM region. One likely candidate for cup in this region was the gene pkd2, based on left-right defects observed in Pkd2 mutant mice (Pennekamp et al., 2002). Therefore, we used the 3′ untranslated region of the pkd2transcript to generate a single nucleotide polymorphism (SNP) marker. SNP mapping of cup recombinant embryos revealed no recombination between pkd2 and the cup locus(Fig. 1A).

Fig. 1.

Identification and structural analysis of cup/pkd2.(A) Mapping of the cup mutation to a genetic interval on chromosome 1. The number of recombinants at each marker is shown. (B) pkd2 encodes a six-pass transmembrane calcium-activated non-specific cation channel [structure modified from Hayashi et al.(Hayashi et al., 1997)]. Sequencing of pkd2 in tc321 mutants revealed a nonsense mutation at nucleotide position 407 and ty30b showed a missense mutation at nucleotide position 1052, resulting in an amino acid substitution from a leucine to proline. (C) Lateral image of wild-type, cuptc321, and cupty30b embryos at 48 hpf. Both alleles have a curly tail upward phenotype, but ty30b has a milder curvature than that of tc321.

Fig. 1.

Identification and structural analysis of cup/pkd2.(A) Mapping of the cup mutation to a genetic interval on chromosome 1. The number of recombinants at each marker is shown. (B) pkd2 encodes a six-pass transmembrane calcium-activated non-specific cation channel [structure modified from Hayashi et al.(Hayashi et al., 1997)]. Sequencing of pkd2 in tc321 mutants revealed a nonsense mutation at nucleotide position 407 and ty30b showed a missense mutation at nucleotide position 1052, resulting in an amino acid substitution from a leucine to proline. (C) Lateral image of wild-type, cuptc321, and cupty30b embryos at 48 hpf. Both alleles have a curly tail upward phenotype, but ty30b has a milder curvature than that of tc321.

The zebrafish pkd2 transcript is 3.5 kb in length and encodes a 904 amino acid protein that is the zebrafish homolog of polycystin 2 (PC2)(Fig. 1B). PC2 is a Ca2+-sensitive cation channel with six hydrophobic stretches and intracellular N- and C-termini(Gonzalez-Perrett et al.,2001; Hanaoka et al.,2000; Vassilev et al.,2001). Zebrafish pkd2 shares 67% and 65% identity, and 78% and 79% similarity, with the human and mouse orthologs, respectively (over 900 and 899 amino acid alignments; data not shown). Similarities include signaling elements such as an EF-Hand and a coiled-coil domain that are located in the C-terminus of the protein(Delmas et al., 2004).

To verify that pkd2 is mutated in cup, each Ensembl-predicted exon was sequenced from cup genomic DNA of two different alleles, cuptc321 and cupty30b. Comparisons between the sequence of wild-type sibling embryos and cuptc321 embryos identified a nonsense mutation in exon 2 that is predicted to generate a truncated protein consisting of only the N-terminal 135 residues(Fig. 1B). ty30bembryos have a missense mutation in exon 5 that changes a T to a C at nucleotide 1052, substituting a proline for a leucine in the first extracellular loop of the protein (Fig. 1B). We originally defined cuptc321 as a stronger allele than cupty30b based on the severity of the tail curl phenotype (Fig. 1C). Since tc321 is likely to be a molecular null based on its predicted protein product, the mutations for each allele are consistent with tc321 being a stronger loss-of-function allele than ty30b. The mouse anti-PC2 antibodies p57 and 58 recognize an antigenic region that includes the conserved leucine residue mutated in ty30b embryos. These antibodies can block PC2-dependent intracellular calcium release from ER stores (Nauli et al., 2003),and we therefore predict that a mutation in this region of the protein would interfere with proper channel activity.

Fig. 2

. curly up embryos display defects in visceral and brain asymmetries. Ventral views of the heart (A-C) and dorsal views of the liver and pancreas (D-F) in cup embryos at 48 hpf. The heart, liver and pancreas were visualized by in situ hybridizations for cmlc2, fkd2, and ins, respectively. Wild-type organ positioning can be seen in approximately one third of a cup mutant population (A and D), where the ventricle loops to the right (A), and the liver resides on the left and the pancreas on the right (D). cupembryos also exhibit situs inversus, as seen by the complete reversal of the heart (B), liver and pancreas (E). Approximately one-third of cupmutants display heterotaxia. Included in this category was an embryo that had correct heart looping (C) but showed a duplicated liver with a reversed pancreas (F). (G,H) Dorsal views of the habenular nuclei and the pineal complex in 3-day cup embryos. The parapineal is outlined in each panel. (G) cup mutant with the wild-type pattern of more intense lov expression in the left habenula, and left parapineal placement visualized by otx5. (H) cup mutant with reversed diencephalic asymmetries. L, left; R, right; V, ventricle; A, atrium; Li,liver; P, pancreas.

Fig. 2

. curly up embryos display defects in visceral and brain asymmetries. Ventral views of the heart (A-C) and dorsal views of the liver and pancreas (D-F) in cup embryos at 48 hpf. The heart, liver and pancreas were visualized by in situ hybridizations for cmlc2, fkd2, and ins, respectively. Wild-type organ positioning can be seen in approximately one third of a cup mutant population (A and D), where the ventricle loops to the right (A), and the liver resides on the left and the pancreas on the right (D). cupembryos also exhibit situs inversus, as seen by the complete reversal of the heart (B), liver and pancreas (E). Approximately one-third of cupmutants display heterotaxia. Included in this category was an embryo that had correct heart looping (C) but showed a duplicated liver with a reversed pancreas (F). (G,H) Dorsal views of the habenular nuclei and the pineal complex in 3-day cup embryos. The parapineal is outlined in each panel. (G) cup mutant with the wild-type pattern of more intense lov expression in the left habenula, and left parapineal placement visualized by otx5. (H) cup mutant with reversed diencephalic asymmetries. L, left; R, right; V, ventricle; A, atrium; Li,liver; P, pancreas.

### cup embryos display defects in visceral and brain asymmetries

cup mutants were reported to have defects in cardiac looping and jogging (Chen et al., 1997). To determine the extent of laterality defects in cup mutants, we analyzed the position of the heart (cmlc2), liver (fkd2),and pancreas (ins) in cup embryos at 48 hours post-fertilization (hpf) using RNA in situ hybridization with markers for these organs. In a wild-type zebrafish embryo, the ventricle of the heart loops towards the right and the atrium loops towards the left, the liver is positioned to the left of the midline and the pancreas lies to right of the midline (Fig. 2A,D). This wild-type pattern was observed in 35% of tc321 and 38% of ty30b embryos, whereas 33% of tc321 and 46% of ty30b mutants showed a complete reversal in the placement of these organs (Fig. 2B,E, Table 1). A heterotaxic phenotype was seen in 32% and 16% of tc321 and ty30bembryos, respectively (Fig. 2C,F, Table 1). Since our mutant population has a clear increase in defects over background,we conclude that cup is globally affecting left-right organ placement.

Table 1.

Defects in visceral and brain asymmetries in cup mutant embryos

Viscera
Brain
GenotypenSitus solitus (%)Situs inversus (%)Heterotaxia (%)nCorrect (%)Reversed (%)
Wild type 100 97.0 0.0 3.0 74 97
cuptc321 97 35.0 33.0 32.0 41 41 59
cupty30b 98 37.8 45.9 16.3 85 45 55
augMO (2ng) 54 53.7 35.2 11.1
SpMO (9ng) 23 39.1 26.1 34.8
Viscera
Brain
GenotypenSitus solitus (%)Situs inversus (%)Heterotaxia (%)nCorrect (%)Reversed (%)
Wild type 100 97.0 0.0 3.0 74 97
cuptc321 97 35.0 33.0 32.0 41 41 59
cupty30b 98 37.8 45.9 16.3 85 45 55
augMO (2ng) 54 53.7 35.2 11.1
SpMO (9ng) 23 39.1 26.1 34.8

Viscera and brain data were collected at 48 hpf and 72 hpf, respectively. MOs were injected between the one- and four-cell stage. The laterality defects associated with 2 ng of pkd2 augMO are less severe than those in embryos injected with a higher dosage, but more general patterning defects can be seen at higher MO concentrations.

Asymmetric neural patterning is defined by the unilateral positioning of the parapineal organ that lies to the left of the pineal organ in the zebrafish epithalamus starting at day 2 of development. By day 4, a left-right neural asymmetry can also be found in the dorsal habenular nuclei, where the left habenula has more neuronal projections than the right habenula(Concha et al., 2000; Gamse et al., 2002; Gamse et al., 2003). In cup mutant embryos, 40-45% display denser projections on the left side as compared with the right, whereas 55-59% show predominant expression of habenula marker genes on the right side. Thus, cup mutants exhibit random placement of neural asymmetric structures across the midline, although the parapineal and larger habenula always remain paired(Fig. 2G,H, Table 1).

### cup affects asymmetric gene expression in LPM and brain

Expression of the zebrafish nodal gene southpaw(spaw) and downstream targets pitx2, lefty1 and lefty2 are restricted to the left LPM during late somitogenesis prior to proper asymmetric localization of organs at 48 hpf(Ahmad et al., 2004). To address how early cup affects left-right patterning, expression of southpaw, pitx2 and lefty1/2 was examined in clutches of 20-to 22-somite embryos from two heterozygote parents for the cupmutation (Table 2). Although 25% of embryos within the clutch should be homozygous mutant for cup,correct expression of spaw at Kupffer's vesicle was observed in all embryos analyzed (data not shown). This is consistent with the finding that the mouse Pkd2 mutation does not affect Nodal expression in the mouse node. By contrast, both cup alleles showed increased frequency of bilateral, right-sided, or absent spaw expression in the LPM, with bilateral expression being the most common(Fig. 3A-D, Table 2). The bilateral spaw expression can be further classified into three categories:bilateral expression extending into the anterior cardiac LPM(Fig. 3B, Table 3); bilateral expression restricted to the posterior portion of the LPM(Fig. 7C, Table 3); and uneven expression on both the left and right sides, where spaw propagates anteriorly on one side and remains posterior on the other half(Fig. 7B, Table 3). In embryos that expressed spaw only posteriorly, lefty was never expressed in the cardiac mesoderm or dorsal diencephalon(Fig. 3H, Table 3, Fig. 7C,D). When spawdid extend anteriorly, expression of lefty correlated with the left-right placement of spaw (Fig. 3A-C, Fig. 7A,B,D, Table 3). Equivalent spaw expression in the anterior LPM resulted in randomized lefty expression in the heartfield. pitx2 expression was also randomized in the LPM for both alleles(Table 2). Thus, zebrafish cup mutants do differ from mouse Pkd2 mutants, which are reported to exhibit a loss of Nodal in the LPM. However, the mouse mutant expresses Pitx2 bilaterally only in the posterior LPM, similar to the spaw phenotype in cup mutants.

Table 2.

Alterations in asymmetric gene expression in cup mutant embryos

spaw
pitx2
lefty1/2
TissueGenotypenL(%)B(%)R(%)A(%)nL(%)B(%)R(%)A(%)nL(%)B(%)R(%)A(%)
LPM Wild type 90 93.3 5.6 0.0 1.1 116 95.7 3.4 0.9 0.0 27 100 0.0 0.0 0.0
cuptc321 114 73.7 20.2 6.1 0.0 192 63.6 16.2 16.6 3.6 114 69.3 1.8 3.5 25.4
cupty30b 102 57.8 29.5 2.9 9.8 168 64.9 15.5 19.6 0.0 95 57.9 3.1 7.4 31.6
Brain Wild type 116 94.8 1.7 0.9 2.6 27 100 0.0 0.0 0.0
cuptc321 101 55.4 3.0 4.0 37.6 114 67.6 1.7 1.7 29.0
cupty30b 169 58.0 5.3 9.5 27.2 95 50.5 2.1 4.2 43.2
spaw
pitx2
lefty1/2
TissueGenotypenL(%)B(%)R(%)A(%)nL(%)B(%)R(%)A(%)nL(%)B(%)R(%)A(%)
LPM Wild type 90 93.3 5.6 0.0 1.1 116 95.7 3.4 0.9 0.0 27 100 0.0 0.0 0.0
cuptc321 114 73.7 20.2 6.1 0.0 192 63.6 16.2 16.6 3.6 114 69.3 1.8 3.5 25.4
cupty30b 102 57.8 29.5 2.9 9.8 168 64.9 15.5 19.6 0.0 95 57.9 3.1 7.4 31.6
Brain Wild type 116 94.8 1.7 0.9 2.6 27 100 0.0 0.0 0.0
cuptc321 101 55.4 3.0 4.0 37.6 114 67.6 1.7 1.7 29.0
cupty30b 169 58.0 5.3 9.5 27.2 95 50.5 2.1 4.2 43.2

L, left; B, bilateral; R, right; A, absent.

The mutant data above reflect the defects seen in clutches of embryos from a cross of tc321 and ty30b heterozygote parents. Therefore,the large percentage of left-sided expression of spaw and pitx2 is due to the approximate 75% of the population of embryos that are wild type or heterozygotes. Percentages of left-sided expression that are less than 75% may be attributed to errors in staging.

Table 3.

Expression of lefty in cardiac LPM correlates with expression of spaw in anterior LPM

lefty expression in the heartfield
spaw expressionnLeftRightBilateralNone
Anterior and posterior expression
Left 83 79
Right
Bilateral (equal)
Bilateral (left anterior; right posterior)
Bilateral (right anterior; left posterior)
None
Posterior expression only
Left
Right
Bilateral (equal) 18 18
lefty expression in the heartfield
spaw expressionnLeftRightBilateralNone
Anterior and posterior expression
Left 83 79
Right
Bilateral (equal)
Bilateral (left anterior; right posterior)
Bilateral (right anterior; left posterior)
None
Posterior expression only
Left
Right
Bilateral (equal) 18 18

In situ hybridization for lefty 1/2 and spaw were performed simultaneously in a clutch of cuptc321embryos. Embryos with expression of spaw in the area of the heartfield are scored as having anterior expression.

Defects in the development of the notochord and/or floorplate can result in bilateral transcription of nodal leading to left-right patterning abnormalities (reviewed by Roessler and Muenke, 2001). Since cup is expressed in the floorplate in zebrafish (see below), we investigated whether notochord or floorplate development is affected in cup mutants by examining expression of shh and lefty1 in 12-somite and 18-somite embryos,respectively. In wild-type embryos, shh is expressed in the notochord and floorplate of the midline and lefty1 is present only in the notochord. Both gene products showed normal expression patterns in pkd2-deficient embryos (data not shown). Expression of alpha-tropomyosin was also unaltered in mutant embryos at 8 somites and 24 hpf, indicating that somitogenesis was proceeding normally (data not shown). Since midline structures appeared unaffected in cup mutants,the bilateral spaw expression cannot be explained by a compromised midline. Thus, in the zebrafish embryo, pkd2 appears to be responsible for restricting spaw transcription to the left side of the LPM. In addition, because we observe a high percentage of spawand pitx2 expression confined to the posterior LPM, we propose that pkd2 plays an additional role in the propagation of nodalsignals in this tissue.

Fig. 3.

curly up affects expression of left-specific genes in the lateral plate mesoderm (LPM) and dorsal diencephalon. Dorsal views of spaw (A-D) and lefty1/2 (E-H) expression in 20- to 22-somite stage embryos (A-H) and ventral views of pitx2expression in the dorsal diencephalon of 24-somite stage embryos (I-L)from cup heterozygote crosses. Alterations from normal left asymmetric Nodal signaling in the LPM (A) in cup mutants include bilateral (B), right (C), and absent (D) expression of spaw in this tissue. Over half of the bilaterally expressing embryos show only posterior propagation of spaw. Similarly, asymmetrically expressed downstream targets of Nodal signaling in the LPM and brain are also disrupted. lefty1/2, which are normally expressed in the left cardiac LPM (E),have bilateral (F), right (G), and absent (H) expression patterns in cup mutants. In H, midline expression of lefty1 can also be seen. pitx2, which is normally expressed on the left side of the diencephalon (I), can be expressed bilaterally (J), on the right (K), or not at all (L) in cup embryos. The majority of embryos show no expression of lefty1/2 in the LPM and diencephalon and no expression of pitx2 in the diencephalon.

Fig. 3.

curly up affects expression of left-specific genes in the lateral plate mesoderm (LPM) and dorsal diencephalon. Dorsal views of spaw (A-D) and lefty1/2 (E-H) expression in 20- to 22-somite stage embryos (A-H) and ventral views of pitx2expression in the dorsal diencephalon of 24-somite stage embryos (I-L)from cup heterozygote crosses. Alterations from normal left asymmetric Nodal signaling in the LPM (A) in cup mutants include bilateral (B), right (C), and absent (D) expression of spaw in this tissue. Over half of the bilaterally expressing embryos show only posterior propagation of spaw. Similarly, asymmetrically expressed downstream targets of Nodal signaling in the LPM and brain are also disrupted. lefty1/2, which are normally expressed in the left cardiac LPM (E),have bilateral (F), right (G), and absent (H) expression patterns in cup mutants. In H, midline expression of lefty1 can also be seen. pitx2, which is normally expressed on the left side of the diencephalon (I), can be expressed bilaterally (J), on the right (K), or not at all (L) in cup embryos. The majority of embryos show no expression of lefty1/2 in the LPM and diencephalon and no expression of pitx2 in the diencephalon.

pitx2 and lefty1 are also transcribed asymmetrically at 24 somites in the dorsal diencephalon of the zebrafish brain(Essner et al., 2000). cup embryos exhibited abnormal expression in the brain with the majority of embryos showing a loss of expression of these Nodal target genes(Fig. 3E-H, Table 2). Thus, pkd2may play a role in the zebrafish diencephalon in sending or receiving an asymmetric signal from the LPM.

### Expression analysis of pkd2

To determine where PC2 activity is required for proper left-right patterning, expression patterns of pkd2 were analyzed by RNA in situ hybridization. Whereas mouse pkd2 is expressed ubiquitously(Pennekamp et al., 2002), we found distinct expression domains for pkd2 in zebrafish. Transcription of pkd2 was first detected at the onset of epiboly in cells marking dorsal fates at dome stage(Fig. 4B). Transcript levels increased as gastrulation continued, with expression expanding into the dorsal marginal cells (Fig. 4D,F). Since transcripts cannot be detected at dome stage and at 40% epiboly in MZoep embryos, which lack most of the mesendoderm, pkd2 is expressed in mesodermal and endodermal precursor cells during gastrulation(Fig. 4C,E). pkd2 also localized to the shield and dorsal forerunner cells (DFCs)(Fig. 4F,J). The DFCs maintained expression of pkd2 as they migrated towards the posterior,leading to a concentrated area of expression at the tailbud(Fig. 4G,K). These transcripts began to become more diffuse as the DFCs formed Kupffer's vesicle. pkd2 mRNA was present in a ring-like pattern outlining the vesicle during early somite formation, but became less visible as somitogenesis proceeded. A low level of expression could be seen in the neural floorplate and pronephric duct primordia during these later stages(Fig. 4H,I,L).

Although not visible by RNA in situ hybridization, a maternal contribution of pkd2 mRNA was detected by RT-PCR at 1-4 cells and 256 cells, both of which are stages prior to the mid-blastula transition (1000 cells)(Fig. 4A). Since Kupffer's vesicle has been implicated in left-right patterning in zebrafish, we predict that PC2 might be acting in this structure to affect left-right patterning(Amack and Yost, 2004; Essner et al., 2005). While this manuscript was in preparation, Bisgrove et al. found that injection of morpholinos against pkd2 to specifically knockdown translation of PC2 in Kupffer's vesicle resulted in left-right patterning defects, supporting a role for PC2 in this location (Bisgrove et al., 2005). cup embryos do have a structurally intact Kupffer's vesicle as seen by light microscopy during mid-somitogenesis, and sox17 expression highlights the proper migration of DFCs towards the tailbud region in mutants during late epiboly stages (data not shown). RNA in situ hybridization for charon, a known Nodal inhibitor expressed at Kupffer's vesicle, also shows normal expression patterns in cupmutant embryos (data not shown) (Hashimoto et al., 2004). These data indicate that pkd2 is not responsible for the formation of Kupffer's vesicle, but rather is acting from within the vesicle to affect asymmetric spaw expression.

### Morpholino knockdown of pkd2-/- results in additional cystic phenotypes in a concentration-dependent manner

We created several morpholinos against the pkd2 transcript. Two MOs were able to effectively phenocopy the cup phenotype, one directed against the pkd2 start site (augMO), and one directed against an intron-exon junction (MO 9697-S1). Alterations in organ positioning and asymmetric spaw expression were examined in order to assess the left-right patterning abnormalities in pkd2 morphants. Although the morphants displayed slightly milder tail curling(Fig. 5A-D), the laterality defects associated with the MO knockdowns were comparable to those of cup mutants (Table 4). Interestingly, pkd2 morphants also exhibited hydrocephalus and dilations in the pronephric region, neither of which was displayed in cup mutants (Fig. 5E,L). A number of genes known to cause cystic kidney phenotypes in other model organisms when mutated have been shown to cause pronephric cysts in zebrafish mutants and morphants(Kramer-Zucker et al., 2005; Liu et al., 2002; Otto et al., 2003; Sun and Hopkins, 2001), and MOs to pkd2 have been reported to cause kidney cysts(Sun et al., 2004). Thus, the finding that the pronephric region is dilated in our pkd2 morphants is not unexpected. However, we note that the dilations in our morphants are more elongated and are more restricted to the glomerulus than those seen in other pronephric mutants and morphants in the laboratory, and may not be representative of true pronephric cysts (our unpublished data). In fact, in cup mutants, severe edema is observed by day 6 in all tissues,suggestive of a general loss in fluid homeostasis not restricted to the pronephros or neural tube. Additionally, cup morphants have defects in body size and organ morphology, suggesting that the MOs cause more global organ patterning defects that could be the cause of the pronephric dilations we observe (see below).

Table 4.

Morpholino knockdown of PC2 results in laterality, kidney and mesendoderm defects in a concentration-dependent manner

Viscera
Pronephric
[pkd2 augMO]nSitus solitus (%)Situs inversus (%)Heterotaxia (%)Abnormal (%)nDilation (%)
Control 45 100.0 0.0 0.0 0.0 29 0.0
1 ng 66 63.6 27.3 9.1 0.0 38 5.3
2 ng 54 53.7 35.2 11.1 0.0 44 65.9
3 ng 84 25.0 42.9 6.0 26.1 53 60.4
4 ng 56 0.0 0.0 0.0 100.0 46 97.8
Viscera
Pronephric
[pkd2 augMO]nSitus solitus (%)Situs inversus (%)Heterotaxia (%)Abnormal (%)nDilation (%)
Control 45 100.0 0.0 0.0 0.0 29 0.0
1 ng 66 63.6 27.3 9.1 0.0 38 5.3
2 ng 54 53.7 35.2 11.1 0.0 44 65.9
3 ng 84 25.0 42.9 6.0 26.1 53 60.4
4 ng 56 0.0 0.0 0.0 100.0 46 97.8

Injections were performed between the one- and four-cell stage in a 5 mg/ml Phenol Red solution. Control injections were with Phenol Red solution alone. The abnormal viscera category includes endoderm defects ranging from multiple liver and pancreata, to thinner body axes that only allowed for midline and improperly shaped abdominal organs. At 4 days, the injected embryos had what appeared to be cystic pronephric regions that differed in size and shape as compared with our normal definition of a kidney cyst. Therefore, we refer to this phenotype as a kidney dilation. Embryos injected with 2 ng or more of the augMO had upward curvatures in their body axes.

Fig. 4.

Expression analysis of pkd2. (A) RT-PCR of pkd2 at early developmental time-points shows presence of maternal pkd2 prior to mid-blastula transition at 1K stage. gapdh was used to control for variations in total RNA for each cDNA library. Maternal contribution of pkd2 RNA cannot be detected by in situ hybridization.(B-E) Lateral views of pkd2 expression patterns in wild-type(B,D) and MZoep (C,E) embryos; anterior is up. Expression of pkd2 is first noticeable at dome stage, where pkd2expression marks the dorsal side of the embryo (arrowhead in B) and continues to be expressed in all dorsal marginal cells by 40% epiboly (D). pkd2expression is in mesendodermal tissue as expression is lost in MZoepembryos (C,E). (F,J) pkd2 RNA is detected at the shield in gastrulating embryos, as well as in the dorsal forerunner cells (DFCs,arrowhead in F and J; F anterior view, dorsal to the right; J is a higher magnification dorsal view focusing on the DFCs). (G,K) At tailbud stage, pkd2 is detected in a circular patch of cells that will soon form Kupffer's vesicle (arrowhead in G and K; G lateral view,anterior is up, dorsal to the left; K is a higher magnification posterior view of region in G denoted by the arrowhead). (H,I,L) Dorsal view of 8-somite (H) and 36-hpf (I) embryos and cross-section view of an 8-somite embryo (L). Faint pkd2 expression highlighting the pronephric collecting ducts is marked with arrows and the more intensely stained floorplate in the midline is marked with arrowheads.

Fig. 4.

Expression analysis of pkd2. (A) RT-PCR of pkd2 at early developmental time-points shows presence of maternal pkd2 prior to mid-blastula transition at 1K stage. gapdh was used to control for variations in total RNA for each cDNA library. Maternal contribution of pkd2 RNA cannot be detected by in situ hybridization.(B-E) Lateral views of pkd2 expression patterns in wild-type(B,D) and MZoep (C,E) embryos; anterior is up. Expression of pkd2 is first noticeable at dome stage, where pkd2expression marks the dorsal side of the embryo (arrowhead in B) and continues to be expressed in all dorsal marginal cells by 40% epiboly (D). pkd2expression is in mesendodermal tissue as expression is lost in MZoepembryos (C,E). (F,J) pkd2 RNA is detected at the shield in gastrulating embryos, as well as in the dorsal forerunner cells (DFCs,arrowhead in F and J; F anterior view, dorsal to the right; J is a higher magnification dorsal view focusing on the DFCs). (G,K) At tailbud stage, pkd2 is detected in a circular patch of cells that will soon form Kupffer's vesicle (arrowhead in G and K; G lateral view,anterior is up, dorsal to the left; K is a higher magnification posterior view of region in G denoted by the arrowhead). (H,I,L) Dorsal view of 8-somite (H) and 36-hpf (I) embryos and cross-section view of an 8-somite embryo (L). Faint pkd2 expression highlighting the pronephric collecting ducts is marked with arrows and the more intensely stained floorplate in the midline is marked with arrowheads.

Fig. 5.

Morpholino knockdown of pkd2-/- causes hydrocephalus and dilations in the pronephric region in high doses. (A-C) Lateral views of 48-hpf embryos. Cross-sections of the brain (D-F) and kidney regions (G-I) at 72 hpf. The pkd2 augMO (4 ng) (C) and pkd2 SpMO (not shown) often have variably milder tail curls than that of a cuptc321 mutant (B) but noticeably different than that of a wild-type embryo (A). The embryos injected with either MO displayed hydrocephalus (F, SpMO) and dilations in the glomerular and tubular regions of the pronephros (I, SpMO) that are not observed in wild-type and cupembryos (D,E and G,H). Arrowheads indicate regions of hydrocephalus (C,F) and arrows indicate the dilations in the area of the pronephros (I). Note the smaller liver and gut tube underlying the pronephric dilations in MO-injected embryos (I).

Fig. 5.

Morpholino knockdown of pkd2-/- causes hydrocephalus and dilations in the pronephric region in high doses. (A-C) Lateral views of 48-hpf embryos. Cross-sections of the brain (D-F) and kidney regions (G-I) at 72 hpf. The pkd2 augMO (4 ng) (C) and pkd2 SpMO (not shown) often have variably milder tail curls than that of a cuptc321 mutant (B) but noticeably different than that of a wild-type embryo (A). The embryos injected with either MO displayed hydrocephalus (F, SpMO) and dilations in the glomerular and tubular regions of the pronephros (I, SpMO) that are not observed in wild-type and cupembryos (D,E and G,H). Arrowheads indicate regions of hydrocephalus (C,F) and arrows indicate the dilations in the area of the pronephros (I). Note the smaller liver and gut tube underlying the pronephric dilations in MO-injected embryos (I).

Since cuptc321 is likely to be a molecular null, the additional phenotypes seen in the pkd2 morphants were somewhat unexpected. To ensure that the N-terminus of PC2 that might be present in cuptc321 embryos would be unable to account for these phenotypic differences, we supplied 9697-S1 splice morphants with the N-terminal fragment of pkd2 upon injection at the 1-4 cell stage. The N-terminus of PC2 was unable to rescue any of the additional phenotypes in these morphants (data not shown). Another possibility is that the MOs are removing the maternal contribution of pkd2, leading to a more severe phenotype. To determine if the additional phenotypes we observe are indeed due to a more severe loss of pkd2, the dependence of these phenotypes on pkd2 augMO concentration was analyzed. Left-right defects in organ placement and spaw expression were evident at the lowest concentration tested (1 ng augMO per embryo), but the curly tail phenotype did not appear until 2 ng of augMO per embryo(Table 4 and data not shown). Dilations in the pronephric area occurred in a low percentage of embryos at this concentration, but increased in frequency with increasing MO concentration (Table 4). Hydrocephalus was only present in a small population of morphants that had been injected with 4 ng of pkd2 augMO(Table 4). However, at this concentration general body defects were observed, including narrowed axes,smaller heads and overall loss of proper organ development. The pancreas and liver were often positioned on the midline and much smaller than in wild-type embryos (Fig. 5I). The glomerulus of the kidney was also often indiscernible in sectioned embryos(Fig. 5I). Thus, left-right patterning is most sensitive to decreases in pkd2 levels, followed by the tail curl and dilation phenotypes, respectively. Overall, these results suggest that zygotic pkd2 is required for left-right patterning and proper tail elongation, whereas loss of maternal pkd2 results in more severe body defects, perhaps owing to mispatterning in the mesendoderm where pkd2 is expressed.

### cup mutants display no obvious structural ciliary defects

Primary cilia exist on the cells that line the ventral node of the mouse embryo. PC2 localizes to these cilia and has been shown to be responsible for eliciting an asymmetric calcium surge in the epithelial cells adjacent to the left side of the node (McGrath et al.,2003). Cilia also reside on the cells of Kupffer's vesicle in the zebrafish embryo (Essner et al.,2002). To determine if cilia are affected in cup morphant and mutant embryos, an antibody against acetylated tubulin was used to visualize cilia by immunofluorescence. As the curly tail phenotype cannot be seen in cup mutants until 33 hpf, pkd2 augMO morphants were analyzed at 12 somites for the presence of cilia on Kupffer's vesicle. The cilia at Kupffer's vesicle in pkd2 morphants appeared structurally intact (Fig. 6A,B), as did the cilia lining the collecting ducts of the kidney in cup mutants at 33 hpf (Fig. 6C,D). Because the formation of Kupffer's vesicle is unaffected in pkd2 mutants and morphants, it was not surprising to see the same circular distribution of cilia in the morphant embryos. Although no obvious structural abnormalities are detected in the cilia of pkd2 mutant zebrafish, we cannot rule out the possibility that the cilia might be functionally compromised.

### The requirement for pkd2 in left-right patterning is conserved, but the role of pkd2 might not be

In this study, we identify pkd2 as the gene affected in the zebrafish cup mutant. pkd2 encodes the cation channel PC2,one of two proteins that are mutated in human polycystic kidney disease(Wu et al., 1997). Similar to the Pkd2 knockout mouse, cup mutants exhibit a variety of organ laterality defects, supporting a conserved requirement for pkd2function in left-right patterning. In pkd2 mutant zebrafish, spaw and pitx2 are both expressed bilaterally in the LPM,and the majority of spaw expression is restricted to the posterior. lefty expression is absent in the cardiac LPM in the majority of cup embryos, although we believe the absence of asymmetric lefty is due to the inability of spaw to propagate in the LPM in embryos lacking PC2 (Fig. 7). We also find discordance in the percentage of embryos expressing bilateral spaw and right-sided pitx2 in cup mutants. We attribute these differences to the following possibilities. Since spaw expression is often uneven in its anterior propagation in cup mutants, the side that receives the spawsignal more prevalently will be the side to express pitx2. Alternatively, although spaw is thought to act directly upstream of pitx2, it is possible that spaw is not the sole regulator of pitx2 in the LPM during these stages.

Fig. 6.

No obvious structural defects in cilia in Kupffer's vesicle or pronephric ducts of pkd2 morphant and mutant embryos.(A-D) Immunofluorescence performed with antibody against acetylated tubulin that allows for visualization of cilia. Cilia at Kupffer's vesicle in wild-type and pkd2 augMO embryos at 12 somites (A,B), and cilia in the pronephric ducts in wild type and in cuptc321 mutants(C,D), are similar in shape and length. Wild-type Kupffer's vesicle cilia are 4.7±1.4 μm and pkd2 augMO Kupffer's vesicle cilia are 4.6±1.3 μm in length.

Fig. 6.

No obvious structural defects in cilia in Kupffer's vesicle or pronephric ducts of pkd2 morphant and mutant embryos.(A-D) Immunofluorescence performed with antibody against acetylated tubulin that allows for visualization of cilia. Cilia at Kupffer's vesicle in wild-type and pkd2 augMO embryos at 12 somites (A,B), and cilia in the pronephric ducts in wild type and in cuptc321 mutants(C,D), are similar in shape and length. Wild-type Kupffer's vesicle cilia are 4.7±1.4 μm and pkd2 augMO Kupffer's vesicle cilia are 4.6±1.3 μm in length.

In mouse, the proposed role for PC2 in activation of Nodal signaling is a prominent feature of the two-cilia' model. In this model (reviewed by Tabin and Vogan, 2003),cilia-generated nodal-flow' is thought to bend non-motile cilia at the left edge of the node and activate PC2. Flow activation of PC2 leads to an increase in calcium at the left edge of the node, which results in activation of the Nodal signaling pathway on the left by an unknown mechanism. Aspects of this model are based in large part on the Pkd2 knockout mouse, as calcium is not upregulated on the left side of the node and Nodal is not activated in the LPM (McGrath et al.,2003; Pennekamp et al.,2002). However, our work convincingly demonstrates that spaw is expressed in embryos lacking the PC2 channel and suggests that the role of PC2 is to restrict spaw to the left LPM.

Fig. 7.

A model for altered asymmetric nodal gene expression in pkd2-deficient zebrafish embryos. (A-C) RNA in situ hybridization for spaw and lefty1/2 in 20-somite embryos that were flat-mounted in order to see all domains of expression. All panels show lefty1 staining in the midline. White arrows mark the anterior and posterior areas of spaw expression and white arrowheads mark lefty expression in the heart field. (D-F) Schematic interpretations of A-C (spaw in blue, lefty in gray). In a wild-type embryo (A,D), spaw is expressed in a posterior-to-anterior pattern on the LPM from 10 somites through 22 somites. lefty1/2 is activated in the left heartfield, the anterior portion of the LPM, beginning at 18 somites. RNA in situ hybridizations for spaw and lefty1/2 together in cup mutants (B,C) reveal a role for the anterior domain of spaw in the activation of the asymmetric expression of lefty1/2 in the cardiac LPM. In all embryos scored, lefty expression is only apparent in embryos where spawreaches the anterior LPM and it always correlates with the side of spaw expression (A,B,D,E). cup mutants primarily exhibit bilateral expression of spaw to varying degrees of posterior to anterior extension (B,C,E,F). Bilateral anterior expression of spawresults in randomized lefty expression, where the heartfield will have left, right, bilateral, or absent lefty. Bilateral posterior expression of spaw always correlates with loss of leftyexpression in the LPM (C,D). Therefore, because pkd2 zebrafish mutants display a defect in spaw propagation, lefty-expressing cells are largely absent from the LPM. In zebrafish,we propose that pkd2 is acting at Kupffer's vesicle (KV) to restrict spaw to the left side of the embryo and that pkd2 plays an additional role in the proper propagation of spaw anteriorly in the LPM (D). pkd2 could also restrict nodal to the left by acting at Kupffer's vesicle to repress nodal activation and propagation on the right LPM (D).

Fig. 7.

A model for altered asymmetric nodal gene expression in pkd2-deficient zebrafish embryos. (A-C) RNA in situ hybridization for spaw and lefty1/2 in 20-somite embryos that were flat-mounted in order to see all domains of expression. All panels show lefty1 staining in the midline. White arrows mark the anterior and posterior areas of spaw expression and white arrowheads mark lefty expression in the heart field. (D-F) Schematic interpretations of A-C (spaw in blue, lefty in gray). In a wild-type embryo (A,D), spaw is expressed in a posterior-to-anterior pattern on the LPM from 10 somites through 22 somites. lefty1/2 is activated in the left heartfield, the anterior portion of the LPM, beginning at 18 somites. RNA in situ hybridizations for spaw and lefty1/2 together in cup mutants (B,C) reveal a role for the anterior domain of spaw in the activation of the asymmetric expression of lefty1/2 in the cardiac LPM. In all embryos scored, lefty expression is only apparent in embryos where spawreaches the anterior LPM and it always correlates with the side of spaw expression (A,B,D,E). cup mutants primarily exhibit bilateral expression of spaw to varying degrees of posterior to anterior extension (B,C,E,F). Bilateral anterior expression of spawresults in randomized lefty expression, where the heartfield will have left, right, bilateral, or absent lefty. Bilateral posterior expression of spaw always correlates with loss of leftyexpression in the LPM (C,D). Therefore, because pkd2 zebrafish mutants display a defect in spaw propagation, lefty-expressing cells are largely absent from the LPM. In zebrafish,we propose that pkd2 is acting at Kupffer's vesicle (KV) to restrict spaw to the left side of the embryo and that pkd2 plays an additional role in the proper propagation of spaw anteriorly in the LPM (D). pkd2 could also restrict nodal to the left by acting at Kupffer's vesicle to repress nodal activation and propagation on the right LPM (D).

The differences between cup and the Pkd2-/-mouse with regards to nodal expression are significant and call into question the validity of strictly applying current models for PC2 function in left-right patterning to zebrafish. It is clear that some aspects of the two-cilia model are valid in zebrafish, but others are not. For example,Kupffer's vesicle is ciliated and there is a fluid flow in this vesicle, but the flow is reported to be circular, and does not have a left bias(Essner et al., 2005; Kramer-Zucker et al., 2005). A number of calcium asymmetries surrounding Kupffer's vesicle have been reported(Sarmah et al., 2005; Webb and Miller, 2000). However, which calcium asymmetries may be relevant for the establishment of the left-right axis and how calcium asymmetries may function in this process are not clear.

One possible explanation for the differences between mouse and zebrafish is that the role for pkd2 in left-right patterning is conserved, but the actual function the channel plays in each organism is not. This would be similar to the situation for Fgf8, which has a conserved role in left-right patterning, but is reported to act as a left-determining factor in mouse and a right-determining factor in chick and rabbit(Boettger et al., 1999; Fischer et al., 2002; Meyers and Martin, 1999). It should be noted, however, that two out of 12 Pkd2 mutant mice described by Pennekamp et al. exhibited bilateral expression of Nodalin the LPM (Pennekamp et al.,2002). Intriguingly, a large percentage of the mouse mutants do exhibit bilateral Pitx2 expression, a downstream target of Nodal signaling, and the domain of expression is restricted to the posterior portion of the embryo (Pennekamp et al., 2002), similar to the posterior expression of spaw in cup mutants. Thus, it is fair to conclude that Nodal signaling can be initiated in the mouse in the absence of PC2,and that the bias of left-sided expression is now lost. This is similar to our findings in fish and suggests that the role of PC2 in left-right patterning in all organisms may need to be reconsidered.

In addition, the mechanism by which PC2 acts in any organism to affect asymmetric events is still unclear. In mouse, PC2 is thought to act at the node to affect left-right patterning. Zebrafish pkd2 is expressed in Kupffer's vesicle, the proposed node-equivalent in teleosts, and Bisgrove et al. report a role for pkd2 in this structure(Bisgrove et al., 2005). A recent model proposes that activity in the mouse node provides a subtle asymmetry on the left side that manifests into robust expression of Nodal in the left LPM through a combination of activating signals on the left and repressive signals on the right(Nakamura et al., 2006). PC2 may be acting from within Kupffer's vesicle to initially bias the activation of spaw gene expression to the left side of the organism. Alternatively, PC2 might be responsible for repressing Nodal signaling on the right half of the embryo (Fig. 7). Based on pkd2 expression data, this repression could take place at multiple sites in the embryo, including Kupffer's vesicle and the floorplate. As no midline defect is apparent in cup mutants, we believe that it is unlikely that PC2 in the floorplate is responsible for restricting spaw to the left side, but this has not been formally proven. If pkd2 is acting at multiple levels to affect the direction of spaw activation and spaw propagation, Nakamura's model(Nakamura et al., 2006)predicts that the majority of embryos would display bilateral expression of spaw, which is what we observe. This model also explains how alterations in Nodal initiation and propagation can result in right-sided or no expression of Nodal, which we observe in a low percentage of cup mutants.

Our results also suggest that maternal pkd2 might play a role in proper mesendoderm patterning of the visceral organs. Thus, it is possible that the effects of pkd2 on left-right patterning could occur prior to the formation of Kupffer's vesicle. Interestingly, in Xenopus,there is evidence that indicates an earlier non-ciliary role for PC2 in left-right patterning prior to gastrulation(Qiu et al., 2005).

### A possible role for Cup in mesendoderm patterning

We find that pkd2 is expressed maternally in zebrafish, and has restricted expression to mesendoderm during early epiboly and gastrulation. Our work with MOs suggests that pkd2 may play a role in the patterning of the mesendoderm. For example, at high doses of MO against pkd2, various mesendoderm defects are apparent, including loss of glomerular tissue in the kidney, smaller organs including the liver and gut,and thinner body axes. These defects are variable, but were seen with two different MOs against pkd2 and are thus likely to be specific defects. The Pkd2 knockout mouse also displays pancreatic, liver,kidney and cardiac complications at early developmental stages, further supporting a function for PC2 in mesoderm and endoderm(Wu et al., 2000).

Although low levels of MO against pkd2 phenocopied the left-right defects seen in zygotic cup mutants, we believe cup mutants are a better system for studying the role of pkd2 in left-right patterning. In fact, while this manuscript was in preparation, another study was published on pkd2 using MOs in zebrafish that came to different conclusions on the role of pkd2 in left-right patterning(Bisgrove et al., 2005). We believe that the differences in our conclusions might be due in part to the additional effects of the pkd2 MO on the mesendoderm, which are not seen in zygotic cup mutants.

Similarly, zygotic cup embryos do not develop pronephric cysts during larval development as would be predicted for a mutation in a gene that causes polycystic kidney disease in other vertebrates. Although we could detect dilations in the pronephric region of wild-type embryos injected with a high concentration of pkd2 augMO, histological sections revealed that the cystic tissue had an unconventional morphology as compared with other cystic mutants in the laboratory (our unpublished data). We believe the MO-specific phenotype in the kidney is due to the knockdown of maternal pkd2 mRNA that is present in zygotic cup mutants, similar to what has been proposed previously (Sun et al., 2004), but because mesendoderm defects are apparent in pkd2 morphants, the cystic kidney phenotype is questionable in its origin. Although MO knockdown of pkd2 could be affecting redundancies in pkd2 or alternative splice forms, we have found no evidence for the existence of these to date. We attempted to analyze protein knockdown in mutants and morphants using several antibodies against human and mouse PC2,but none of these antibodies were able to cross-react with the zebrafish protein as assessed by whole-mount in situ hybridization or western blotting. Future studies on whether maternal pkd2 mRNA is affecting early mesendoderm patterning will be needed to fully understand the dilated kidney phenotype we observe in the morphants.

### Organ laterality defects in cup mutants suggest multiple levels of regulation in left-right patterning

Visceral organ patterning is affected in cup mutants and can be categorized into three main sub-groups: normal organ positioning, situs inversus, and heterotaxia. It is intriguing that each phenotypic group constitutes about one-third of the total population of cup mutants,and we see similar segregation in other asymmetry mutants in our laboratory(our unpublished results). It has been proposed that in the absence of asymmetric signaling, each organ will randomly adopt a position on the left-right axis resulting in a high degree of heterotaxia(Burdine and Schier, 2000; Concha et al., 2000; Yan et al., 1999). The fact that such a large population of mutants with altered spaw signaling retains either wild-type or completely inverted patterning is unexpected and suggests some global left-right information is still retained when asymmetric Nodal signaling is disrupted. This idea is further supported by the finding that whereas over 30% of cup mutant embryos show complete situs inversus, only a small percentage of them show right-sided spawexpression. We have shown that the expression of downstream asymmetric genes depends on the magnitude of spaw expression on each side, and thus it is important to incorporate the expression patterns of multiple Nodal pathway signals in a model of how asymmetric nodal genes translate into the proper positioning of the organs.

cup mutants also show a loss of asymmetric gene expression in the dorsal diencephalon of the brain at 24 somites and randomized asymmetric placement of the parapineal and dorsal habenula. These data are consistent with the phenotypes of other mutants that lack Nodal signaling in the zebrafish brain (Concha et al.,2000). cup embryos are unique, though, in their ability to activate Nodal pathway gene expression in the LPM but not in the diencephalon of most mutants. It is intriguing to speculate that the activation of nodal genes in the brain might also be dependent on the anterior propagation of spaw in the LPM, or upon pkd2activity in the diencephalon.

We thank Robert Geisler and members of the Geisler laboratory for the original bulked segregant analysis that placed cup onto chromosome 1;Joe Yost and Brent Bisgrove for fruitful discussions and for sharing data prior to publication; Zhoaxia Sun for providing an aliquot of the hi4166 morpholino; members of the zebrafish community for providing in situ plasmids;and Liz Gavis, Trudi Schupbach, Marc F. Schwartz, Eric Wieschaus and members of the Burdine laboratory for comments on the work and manuscript. This work was funded in part by awards to R.D.B. from the American Heart Association. R.D.B. is the 44th Mallinckrodt Scholar of the Edward Mallinckrodt Junior Foundation.

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