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Journal Articles

A kinase translocation reporter reveals real-time dynamics of ERK activity in Drosophila

Alice C. Yuen, Anadika R. Prasad, Vilaiwan M. Fernandes, Marc Amoyel

Biol Open (2022) 11 (5): bio059364.

DOI: https://doi.org/10.1242/bio.059364

Published: 24 May 2022

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Includes: Supplementary data

Journal Articles

Oo-site: A dashboard to visualize gene expression during Drosophila oogenesis suggests meiotic entry is regulated post-transcriptionally

Elliot T. Martin, Kahini Sarkar, Alicia McCarthy, Prashanth Rangan

Biol Open (2022) 11 (5): bio059286.

DOI: https://doi.org/10.1242/bio.059286

Published: 17 May 2022

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Includes: Supplementary data

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Antibodies targeting the European lobster ( Palinurus elephas ) vitellogenin developed by mRNA isolation and in-silico-designed antigenic peptides

Faustina B. Cannea, Maria Cristina Follesa, Cristina Porcu, Rossano Rossino, Alessandra Olianas, Antonio Rescigno, Alessandra Padiglia

Biol Open (2022) 11 (5): bio059019.

DOI: https://doi.org/10.1242/bio.059019

Published: 13 May 2022

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Includes: Supplementary data

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Phenotype assessment for neurodegenerative murine models with ataxia and application to Niemann–Pick disease, type C1

Julia Yerger, Antony C. Cougnoux, Craig B. Abbott, Rachel Luke, Tannia S. Clark, Niamh X. Cawley, Forbes D. Porter, Cristin D. Davidson

Biol Open (2022) 11 (4): bio059052.

DOI: https://doi.org/10.1242/bio.059052

Published: 3 May 2022

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Includes: Supplementary data

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Assigning metabolic rate measurements to torpor and euthermy in heterothermic endotherms: ‘torpor’, a new package for R

Nicolas J. Fasel, Colin Vullioud, Michel Genoud

Biol Open (2022) 11 (4): bio059064.

DOI: https://doi.org/10.1242/bio.059064

Published: 4 April 2022

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Includes: Supplementary data

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Inertial biometry from commercial 3D body meshes

Alberto E. Minetti, Luca Ruggiero

Biol Open (2022) 11 (3): bio058927.

DOI: https://doi.org/10.1242/bio.058927

Published: 28 March 2022

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A deep-dive into fictive locomotion – a strategy to probe cellular activity during speed transitions in fictively swimming zebrafish larvae

Harmen Kornelis Koning, Aikeremu Ahemaiti, Henrik Boije

Biol Open (2022) 11 (3): bio059167.

DOI: https://doi.org/10.1242/bio.059167

Published: 22 March 2022

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Journal Articles

Genetically inducible and reversible zebrafish model of systemic inflammation

Kevin A. Lanham, Megan L. Nedden, Virginia E. Wise, Michael R. Taylor

Biol Open (2022) 11 (3): bio058559.

DOI: https://doi.org/10.1242/bio.058559

Published: 9 March 2022

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An optimized retroviral toolbox for overexpression and genetic perturbation of primary lymphocytes

Lieve E. H. van der Donk, Jet van der Spek, Tom van Duivenvoorde, Marieke S. ten Brink, Teunis B. H. Geijtenbeek, Coenraad P. Kuijl, Jeroen W. J. van Heijst, Louis S. Ates

Biol Open (2022) 11 (2): bio059032.

DOI: https://doi.org/10.1242/bio.059032

Published: 1 March 2022

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Includes: Supplementary data

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Computational anatomy and geometric shape analysis enables analysis of complex craniofacial phenotypes in zebrafish

Kelly M. Diamond, Sara M. Rolfe, Ronald Y. Kwon, A. Murat Maga

Biol Open (2022) 11 (2): bio058948.

DOI: https://doi.org/10.1242/bio.058948

Published: 17 February 2022

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Includes: Supplementary data

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Construction of a human hTERT RPE-1 cell line with inducible Cre for editing of endogenous genes

Naushin L. Hindul, Amarjot Jhita, Daiana G. Oprea, Tasnim Alamgir Hussain, Oksana Gonchar, Miguel Angel Muro Campillo, Laura O'Regan, Masato T. Kanemaki, Andrew M. Fry, Kouji Hirota, Kayoko Tanaka

Biol Open (2022) 11 (2): bio059056.

DOI: https://doi.org/10.1242/bio.059056

Published: 16 February 2022

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Includes: Supplementary data

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Novel protocol to observe the intestinal tuft cell using transmission electron microscopy

Takuma Kozono, Miwa Tamura-Nakano, Yuki I. Kawamura, Takashi Tonozuka, Atsushi Nishikawa

Biol Open (2022) 11 (2): bio059007.

DOI: https://doi.org/10.1242/bio.059007

Published: 16 February 2022

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exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates

Tom Carruthers, Robert W. Scotland

Biol Open (2022) 11 (2): bio059181.

DOI: https://doi.org/10.1242/bio.059181

Published: 11 February 2022

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A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome

Bilal M. Akhtar, Priyanka Bhatia, Shubhra Acharya, Sanjeev Sharma, Yojet Sharma, Aswathy Bhuvanendran Nair Suseela Devi, Kavina Ganapathy, Anil Vasudevan, Padinjat Raghu

Biol Open (2022) 11 (1): bio059066.

DOI: https://doi.org/10.1242/bio.059066

Published: 4 February 2022

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Includes: Supplementary data

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Myotonic dystrophy type 1 embryonic stem cells show decreased myogenic potential, increased CpG methylation at the DMPK locus and RNA mis-splicing

Silvie Franck, Edouard Couvreu De Deckersberg, Jodi L. Bubenik, Christina Markouli, Lise Barbé, Joke Allemeersch, Pierre Hilven, Geoffrey Duqué, Maurice S. Swanson, Alexander Gheldof, Claudia Spits, Karen D. Sermon

Biol Open (2022) 11 (1): bio058978.

DOI: https://doi.org/10.1242/bio.058978

Published: 12 January 2022

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Includes: Supplementary data

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A new method to localise and quantify oxidative stress in live juvenile mussels

Natalí J. Delorme, Alfonso J. Schmidt, Leonardo N. Zamora, David J. Burritt, Norman L. C. Ragg

Biol Open (2021) 10 (12): bio059030.

DOI: https://doi.org/10.1242/bio.059030

Published: 14 December 2021

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Journal Articles

Specificity and off-target effects of AAV8-TBG viral vectors for the manipulation of hepatocellular gene expression in mice

Christos Kiourtis, Ania Wilczynska, Colin Nixon, William Clark, Stephanie May, Thomas G. Bird

Biol Open (2021) 10 (9): bio058678.

DOI: https://doi.org/10.1242/bio.058678

Published: 22 September 2021

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Includes: Supplementary data

Journal Articles

Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects

Braedan M. McCluskey, Yipeng Liang, Victor M. Lewis, Larissa B. Patterson, David M. Parichy

Biol Open (2021) 10 (9): bio058814.

DOI: https://doi.org/10.1242/bio.058814

Published: 20 September 2021

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Includes: Supplementary data

Journal Articles

A versatile, automated and high-throughput drug screening platform for zebrafish embryos

Alexandra Lubin, Jason Otterstrom, Yvette Hoade, Ivana Bjedov, Eleanor Stead, Matthew Whelan, Gaia Gestri, Yael Paran, Elspeth Payne

Biol Open (2021) 10 (9): bio058513.

DOI: https://doi.org/10.1242/bio.058513

Published: 2 September 2021

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Includes: Supplementary data

Journal Articles

Targeted mass spectrometry for monitoring of neural differentiation

Rita Sucha, Martina Kubickova, Jakub Cervenka, Marian Hruska-Plochan, Dasa Bohaciakova, Katerina Vodickova Kepkova, Tereza Novakova, Katerina Budkova, Andrej Susor, Martin Marsala, Jan Motlik, Hana Kovarova, Petr Vodicka

Biol Open (2021) 10 (8): bio058727.

DOI: https://doi.org/10.1242/bio.058727

Published: 6 August 2021

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Includes: Supplementary data

2 3 4 5

NARROW

A kinase translocation reporter reveals real-time dynamics of ERK activity in Drosophila

Oo-site: A dashboard to visualize gene expression during Drosophila oogenesis suggests meiotic entry is regulated post-transcriptionally

Antibodies targeting the European lobster ( Palinurus elephas ) vitellogenin developed by mRNA isolation and in-silico-designed antigenic peptides

Phenotype assessment for neurodegenerative murine models with ataxia and application to Niemann–Pick disease, type C1

Assigning metabolic rate measurements to torpor and euthermy in heterothermic endotherms: ‘torpor’, a new package for R

Inertial biometry from commercial 3D body meshes

A deep-dive into fictive locomotion – a strategy to probe cellular activity during speed transitions in fictively swimming zebrafish larvae

Genetically inducible and reversible zebrafish model of systemic inflammation

An optimized retroviral toolbox for overexpression and genetic perturbation of primary lymphocytes

Computational anatomy and geometric shape analysis enables analysis of complex craniofacial phenotypes in zebrafish

Construction of a human hTERT RPE-1 cell line with inducible Cre for editing of endogenous genes

Novel protocol to observe the intestinal tuft cell using transmission electron microscopy

exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates

A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome

Myotonic dystrophy type 1 embryonic stem cells show decreased myogenic potential, increased CpG methylation at the DMPK locus and RNA mis-splicing

A new method to localise and quantify oxidative stress in live juvenile mussels

Specificity and off-target effects of AAV8-TBG viral vectors for the manipulation of hepatocellular gene expression in mice

Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects

A versatile, automated and high-throughput drug screening platform for zebrafish embryos

Targeted mass spectrometry for monitoring of neural differentiation

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